Very interesting, especially as these are the type of conditions I could face here in NZ. So far, since switching to single walled shelters and bivies, I seem to have been blessed by the weather gods.
A few thoughts:
1. Did you have the bivy zipped up and the hood lifted up using the attached cord. This would potentially create a small gap between the bag and the bivy in some areas. Of course zipping the bivy up would also reduce ventilation. Also did you have Duomid fully sealed, or did you have the zip undone to the mid point clasp?
2. You may have seen it, but a solid inner is available for the Duomid – http://oookworks.com/duomid_ripstop.html.
3. I have often wondered if a primarily momentum bivy made in the style of the MLD Bug bivy would help in these situations, as the fabric would not be lying on the bag. It would be pretty light for a solid inner. A bit of mesh in the right places would help prevent the feeling of being in a coffin :).
4. As Eric said just using a bathtub ground sheet and no bivy may in fact be better in these situations, as long as condensation being knocked of the tent walls by wind isn't a big issue. The Duomid fully done up provides good protection against wind and driven rain.
5. I remember reading an article by Collin Ibottson (UK ultra lighter) where he explained that he felt the large size of the US style bivys (generally rectangular shaped rather then shaped like a mummy bag) increased the risk of condensation because of the large area of non breathable silnylon on the base.

