Like many others have posted, leave the filter behind. Pack lightly. Don't take a Steri-pen. AquaMira tablets are handed out at every commissary and they are generous and light weight.
Every staffed camp has water. You will either pass through or stay in one just about every day on about every trek. As others have posted, ranger staff will post if water needs to be treated. A happy backcountry staff is a staff that has fresh water and doesn't have to treat their water every day!
Water availability is posted in Base Camp at Logistics. You will go to Logistics your first day in base camp. Go again in the morning you depart with your Crew Leader and note what is posted where and PLAN where you will get water if water is not available as posted. "Ample" does not mean free-flowing or clear!
We went this year (2012) arriving in base camp June 10, which is only 2 days from the opening of the ranch. The water boards were not all updated, since backcountry staff and rangers had not been everywhere or reported in yet. So we had two sites with little or no water. Had we absolutely needed to, we would have used a bandana to filter the scum out of the cattle pond and treated with AquaMira, but we managed through it.
Our crew had a few members with only 3L water capacity, and they wished they had more – not to keep full and carry all the time, but to fill in preparation for long and/or dry days. I recommend 5L capacity for everyone, and then plan when in your trek you actually need to carry the extra weight. This will change based on water availability throughout the season. Take extra collapsible water bags or canteens and use them on your dry days to supplement individual water storage. We carried two 3L canteens.
In camp, your water usage will depend greatly on how you plan to cook and clean. If you cook and clean the Philmont way (family style in a big pot that you then have to wash), you will need lots more water than if you cook in a turkey bag in the big pot (requires no cleaning if the bag stays intact) or rehydrate in the meal pouches. My 12-man crew brought 2 2L pots and other than for coffee or cocoa only heated 4L of water for meals we cooked in the bags. We ate out of food bags and ziploc bags. We also did no dishes as we had a human sump with us (ha!).