Basically, I am down to three stoves for camping.
1) Simmerlite: This was purchased primarily to get a replacement pump for the older whisperlite which blew apart. But it ran about the same so I gave the Whisperlite away. This is for base camping. Never tried auto-gas in it.
2) SVEA 123R: General backpacking of 5 nights or more, or, with a partner. Just too efficient to replace with anything else. Self contained, a PET bottle for fuel offsets any weight disadvantage. Can burn auto gas, but this will hurt performance, and, do it out of your tent.
3) Alcohol sideburner: With a wider pot, a "grease" pot this is all that is needed for fastpacking and UL trips of a few nights.
I have tried maybe a hundred different stoves (canisters, wood, and more "exotic" fuels) and almost as many different pots (Ti, SS, Steel) but always go back to one of the above. Mostly, due to fuel costs, I do 30-60 nights camping per year.
I reached identical conclusions regarding canister stoves. The weight between the two types really doesn't matter enough to make it worth it. Rather, I refined my technique for using the equipment I had.
Base camping, it doesn't matter about fuel, compactness and reliability. Any stove will do unless you are on an arctic trip of in the mountains of Nepal. I don't go there. It gets about .5oz per liter of water boiled. At ~9500-10000BTU it really churns out heat.
A SVEA?? Yes, it weighs 1 pound(17oz.) It also includes a cup (2oz.) I regularly get about .3oz per liter, often better. A 12oz drink bottle weighs about 10oz. full of WG… Enough for a week. Compact and reliable, I pay in terms of weight and cooking speed. At ~4500BTU, it is in between Alcohol and the Simmerlite for cook times.
The alcohol stoves are light and slow to heat up water. For a cup or two, they work well. Very light, if I am traveling between point A and point B, these are ideal. Fuel costs are higher than WG, by about double. (At todays prices-2011: $9/gallon for white gas, $14/gallon for SLX at a lower heat density.)
Typically, good canister stoves are more convenient. The set up time is about the same. I prime and burn the SVEA. I have to assemble the stove and burn the canister stoves. Tear down is a bot more complicated, since I need to top off the tank in the SVEA. The SVEA handles wind better. In most cases, I ignore this, since both require a sheltered spot. On occasion I have had the Lindal valves leak. No choice…I leave the canister assembled. But, it has happened several times on different stoves. One was a slow leak that went unnoticed. I now wet my finger over the valve to check it before putting it away. I have to carry a pen to mark it or scratch a mark in the paint. The canisters cook better. I can set the flame to low, go down and catch a fish, and come back to make coffee and supper. Canisters are a pain to carry. Spares are awkward shaped and do not fit into the pouches properly, though 4oz is better than 8oz. They waste space in my pack(having an air space in them) and do not have the same high reliability as the SVEA, but, having a pump mechanism, neither does the Simmerlite.
Basically, it is a matter of personal preference, where you hike, what you do when you get there. For weight between the two, they are so close to the same it doesn't matter. For reliability between the WindPro and Simmerlite, they are about the same. For compactness and ease of packing, the Simmerlite has a slight edge. For cost, the Simmerlite is way ahead. WG is cheap compared with canister gas. For "cool" factor the canisters are newer and more "cool."
Personal preference is what it boils down to. The difference in a 9lb pack base weight for 2-3 nights is always offset by alcohol. For more than that. The base weight goes to 10lb for a week. Most people will not notice any difference between the two stoves…there is basically none. The variables involved get too personal to call. Use what you like. For myself, I like to save a few dollars for the end of trail beers.