While I am aware of the intent of the op in comparing the Jetboil with alcohol stoves it needs to be remembered that there are much lighter gas options than the Jetboil. My one person setup weighs in at 250g (8.8oz)(Monatauk Gnat, cozy, windshield and 550ml pot plus the dead weight of a 100g canister) giving a dead weight saving of 130g (33%) over the Jetboil with relatively close fuel performance. Adding a bigger pot still only adds 25-35g (approx 1oz).
I agree that for 2-3 days alcohol will be lighter but I side with the ease of use crowd and I have sufficient fuel if I decide I want more hot drinks than I planned for.
A solution to the stack of part used canisters is to carry two part used ones on easy trips – only a weight penalty of 90g for 100g capacity canisters.

