There are lots of water treatment options out there. A brief rundown:
1) Boiling
2) Chemicals
3) Filtering
4) None
5) Radiation
Boiling, often just till it rolls. Most baddies are killed with the exception of a few spores and perhaps a few rare species of algae, bacteria. Nothing that will make you sick. Call it 100%.
Chemicals: Iodine, MIOX, AquaMira, etc. Good, but require about a 3-4 hour wait time to kill everything within 99.99% Ignoring Crypto & bacterial spores, about 15 minutes. Often, not very effective against macrobiotics.
Filters: Smaller pore size is better. The trade off is flow. Even overnight filters require you to carry a days worth of water for whatever conditions. And, if they stop up overnight, you will NOT have enough by morning. Excelent for macrobiotics.
None: Most temperate climates in mountains outside of populated or grazed areas are good. Springs are usually good. You takes you chances…
Radiation: UV and shorter wave lengths, mostly. Generally, this is about a minute and kills everything except macrobiotics, though effective. Tapeworm eggs are found to be mostly killed, but, you need a 100% to make it safe to use in that type of environment, Isle Royale for example.
Macrobiotics are usually tapeworms, flukes and eggs.
Only a combination of filtering and chemicals, or, filtering and radiation are really good for bad water. Boiling will ALWAYS work. Cooking will qualify as boiling.
None of these is real effective against chemical polutants: fertilizers, mercury, cesium, etc. More sophisticated filtering is needed for that.