Nice diagram Marco! That is exactly what I was trying to explain. It seems that for the purposes of a stuff sack, these peel forces are minimal enough to be a non-issue, but it is something to think about. MLD & MountainFitter are both selling full bonded drawstring stuff sacks, so they must be confident these peel forces are minor enough to be a non-issue.
For something like a stuff sack the overall stresses are usually pretty small compared to something like a tent or tarp, so sewing is likely fine. It also doesn't matter nearly as much if the holes do stretch a bit. I've done it both ways and sewing is a LOT faster, but bonding gives a nicer looking result. For the drawcord area, one could also bond and then sew it along the top of the bond to prevent any peeling.
Regarding zippers, it may actually be possible to bond a zipper into place if you are using a waterproof (Uretek) zipper. From my experience, the Uretek actually bonds decently well to cuben, because it seems to also be some sort of a plastic. I considered doing this with my cuben tent fly, but I was just too nervous to guinea pig this technique so I sewed it. When I sewed in my zipper, I folded the cuben over 1" and bonded it. Then I sewed the zipper to that. [confusing explanation ahead] This is only two layers of cuben being sewed, but both layers are bonded together before sewing which seems stronger than sewing 2 non-bonded layers, and secondly, both layers are working in the same direction so they are both working to prevent the stitch hole from stretching. If you sew two layers of cuben together where the layers are being pulled in opposite directions (like the ridgeline of a tarp) then they are being stressed on opposite sides of the stitch hole, so each layer is really on it's own to prevent the stitch hole from enlarging.
Here's a few pics that I'm posting partially because they are pertinent to this post, but mostly just cause I'm proud of this work.
1" folded bond and then sewed:

Reinforcement patch on both sides of the cuben so it's 3x thickness and then I sewed on this loop which is what holds the door open:

Bonded stuff sack except the drawstring area. Circular bottom:
